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Ucsc genome browser querier

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/ucsc-genome-browser-querier

UCSC Genome Browser query skill for genome annotation retrieval and track data accessFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill ucsc-genome-browser-querier

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 165 tokens by cl100k_base, as published. Nobody here has run it

UCSC Genome Browser Querier Skill

Purpose

Provide UCSC Genome Browser queries for genome annotation retrieval and track data access.

Capabilities

  • Track data retrieval
  • Custom track upload
  • Genome annotation queries
  • Conservation score extraction
  • Table browser queries
  • bigWig/bigBed handling

Usage Guidelines

  • Query relevant annotation tracks
  • Upload custom data for visualization
  • Extract conservation scores for analysis
  • Use Table Browser for data extraction
  • Handle bigWig/bigBed formats efficiently
  • Document genome assembly versions

Dependencies

  • UCSC API
  • kent utilities
  • pyBigWig

Process Integration

  • Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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