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String network analyzer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/string-network-analyzer

STRING protein interaction network skill for functional enrichment and network visualizationFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill string-network-analyzer

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.5 KB, 162 tokens by cl100k_base, as published. Nobody here has run it

STRING Network Analyzer Skill

Purpose

Provide STRING protein interaction network analysis for functional enrichment and network visualization.

Capabilities

  • Protein-protein interaction queries
  • Network clustering
  • Functional enrichment analysis
  • Cytoscape integration
  • Network visualization
  • Interaction confidence scoring

Usage Guidelines

  • Query interactions with appropriate confidence thresholds
  • Cluster networks to identify modules
  • Perform functional enrichment on modules
  • Visualize networks with meaningful layouts
  • Export to Cytoscape for advanced visualization
  • Document confidence thresholds and filters

Dependencies

  • STRING-db
  • Cytoscape
  • NetworkX

Process Integration

  • Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
  • Multi-Omics Data Integration (multi-omics-integration)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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