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Perseus statistical analyzer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/perseus-statistical-analyzer

Perseus statistical analysis skill for proteomics data analysis and visualizationFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill perseus-statistical-analyzer

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SKILL.md

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Perseus Statistical Analyzer Skill

Purpose

Enable Perseus statistical analysis for proteomics data analysis and visualization.

Capabilities

  • Missing value imputation
  • Normalization strategies
  • Statistical testing (t-test, ANOVA)
  • Hierarchical clustering
  • PCA and enrichment analysis
  • Publication-quality plots

Usage Guidelines

  • Impute missing values appropriately
  • Normalize data before statistical analysis
  • Apply appropriate statistical tests
  • Visualize results with clustering and PCA
  • Generate publication-quality figures
  • Document normalization and imputation methods

Dependencies

  • Perseus
  • MSstats
  • limma

Process Integration

  • Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
  • Multi-Omics Data Integration (multi-omics-integration)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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