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Fastqc quality analyzer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/fastqc-quality-analyzer

Sequencing quality control skill for assessing read quality, adapter contamination, and sequence compositionFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill fastqc-quality-analyzer

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.6 KB, 185 tokens by cl100k_base, as published. Nobody here has run it

FastQC Quality Analyzer Skill

Purpose

Enable sequencing quality control for assessing read quality, adapter contamination, and sequence composition metrics.

Capabilities

  • Per-base quality score analysis
  • Sequence duplication detection
  • Adapter content identification
  • GC content analysis
  • Overrepresented sequence detection
  • MultiQC report aggregation

Usage Guidelines

  • Run FastQC on all raw sequencing data
  • Review quality metrics before alignment
  • Identify samples requiring additional QC
  • Aggregate results with MultiQC for cohort overview
  • Flag samples with quality issues
  • Document QC decisions and thresholds

Dependencies

  • FastQC
  • MultiQC
  • fastp

Process Integration

  • Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
  • Long-Read Sequencing Analysis (long-read-analysis)
  • Analysis Pipeline Validation (pipeline-validation)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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