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Gsea pathway analyzer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/gsea-pathway-analyzer

Gene Set Enrichment Analysis skill for functional annotation and pathway interpretationFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill gsea-pathway-analyzer

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.5 KB, 184 tokens by cl100k_base, as published. Nobody here has run it

GSEA Pathway Analyzer Skill

Purpose

Enable Gene Set Enrichment Analysis for functional annotation and pathway interpretation.

Capabilities

  • Preranked GSEA execution
  • Gene ontology enrichment
  • KEGG/Reactome pathway analysis
  • Custom gene set support
  • Leading edge analysis
  • Publication-ready visualizations

Usage Guidelines

  • Rank genes appropriately for analysis type
  • Select relevant gene set collections
  • Apply multiple testing correction
  • Identify leading edge genes for interpretation
  • Generate clear visualizations
  • Document gene set versions

Dependencies

  • GSEA
  • clusterProfiler
  • g:Profiler
  • Enrichr

Process Integration

  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
  • Single-Cell RNA-seq Analysis (scrnaseq-analysis)
  • Multi-Omics Data Integration (multi-omics-integration)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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