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Maxquant processor

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/maxquant-processor

MaxQuant mass spectrometry skill for protein identification and quantificationFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill maxquant-processor

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.5 KB, 182 tokens by cl100k_base, as published. Nobody here has run it

MaxQuant Processor Skill

Purpose

Provide MaxQuant mass spectrometry analysis for protein identification and quantification.

Capabilities

  • Andromeda search engine execution
  • Label-free quantification (LFQ)
  • TMT/iTRAQ labeled quantification
  • Match between runs
  • FDR control and filtering
  • PTM site localization

Usage Guidelines

  • Configure search parameters for experiment type
  • Select appropriate quantification method
  • Enable match between runs for improved quantification
  • Apply FDR filtering at protein and peptide level
  • Localize PTM sites accurately
  • Document database and parameter versions

Dependencies

  • MaxQuant
  • MSFragger
  • Proteome Discoverer

Process Integration

  • Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
  • Multi-Omics Data Integration (multi-omics-integration)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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