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Igv genome browser

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/igv-genome-browser

IGV integration skill for interactive genome visualization and reviewFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill igv-genome-browser

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 162 tokens by cl100k_base, as published. Nobody here has run it

IGV Genome Browser Skill

Purpose

Enable IGV integration for interactive genome visualization and review.

Capabilities

  • BAM/VCF/BED visualization
  • Batch screenshot generation
  • Session management
  • Track customization
  • Region navigation
  • Multi-sample comparison

Usage Guidelines

  • Load appropriate reference genome
  • Configure tracks for analysis needs
  • Generate batch screenshots for reports
  • Save sessions for reproducibility
  • Navigate to regions of interest
  • Compare multiple samples visually

Dependencies

  • IGV
  • IGV.js
  • JBrowse2

Process Integration

  • Clinical Variant Interpretation (clinical-variant-interpretation)
  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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