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Alphafold predictor

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/alphafold-predictor

AlphaFold protein structure prediction skill with confidence assessment and model analysisFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill alphafold-predictor

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.5 KB, 166 tokens by cl100k_base, as published. Nobody here has run it

AlphaFold Predictor Skill

Purpose

Enable AlphaFold protein structure prediction with confidence assessment and model analysis.

Capabilities

  • Structure prediction execution
  • pLDDT confidence scoring
  • PAE analysis
  • Multi-chain complex prediction
  • Template-based refinement
  • ColabFold integration

Usage Guidelines

  • Review pLDDT scores for prediction confidence
  • Analyze PAE for domain boundaries
  • Predict complexes for multi-protein assemblies
  • Use templates when homologs exist
  • Validate predictions against experimental data
  • Document model versions and parameters

Dependencies

  • AlphaFold2
  • ColabFold
  • RoseTTAFold

Process Integration

  • Protein Structure Prediction (protein-structure-prediction)
  • Molecular Docking and Virtual Screening (molecular-docking)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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