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Ga4gh standards validator

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/ga4gh-standards-validator

GA4GH standards compliance skill for data sharing and interoperabilityFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill ga4gh-standards-validator

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SKILL.md

1.4 KB, 165 tokens by cl100k_base, as published. Nobody here has run it

GA4GH Standards Validator Skill

Purpose

Provide GA4GH standards compliance for data sharing and interoperability.

Capabilities

  • VCF/BAM format validation
  • htsget API compliance
  • Beacon protocol testing
  • DRS/WES/TES compliance
  • Data model validation
  • Interoperability testing

Usage Guidelines

  • Validate file formats against specifications
  • Test API compliance for data sharing
  • Implement Beacon for variant queries
  • Ensure workflow execution standards compliance
  • Validate data models for exchange
  • Document compliance status

Dependencies

  • GA4GH toolkits
  • htslib
  • Beacon v2

Process Integration

  • Genomic Data Governance (genomic-data-governance)
  • Reproducible Research Workflow (reproducible-research)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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