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Metaphlan profiler

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/metaphlan-profiler

MetaPhlAn metagenomic profiling skill for species-level community compositionFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill metaphlan-profiler

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.3 KB, 158 tokens by cl100k_base, as published. Nobody here has run it

MetaPhlAn Profiler Skill

Purpose

Enable MetaPhlAn metagenomic profiling for species-level community composition.

Capabilities

  • Clade-specific marker gene analysis
  • Species-level quantification
  • Strain-level profiling (StrainPhlAn)
  • Unknown species estimation
  • Multi-sample heatmaps
  • Comparative analysis

Usage Guidelines

  • Use latest marker database
  • Profile at species level for most analyses
  • Apply strain-level analysis when relevant
  • Visualize community composition
  • Compare across samples and conditions
  • Document database versions

Dependencies

  • MetaPhlAn4
  • StrainPhlAn
  • mOTUs

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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