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Humann functional profiler

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/humann-functional-profiler

HUMAnN functional profiling skill for metagenomic pathway analysisFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill humann-functional-profiler

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.3 KB, 150 tokens by cl100k_base, as published. Nobody here has run it

HUMAnN Functional Profiler Skill

Purpose

Provide HUMAnN functional profiling for metagenomic pathway analysis.

Capabilities

  • Gene family quantification
  • MetaCyc pathway abundance
  • UniRef annotation
  • Stratified functional profiles
  • Pathway coverage analysis
  • Custom database integration

Usage Guidelines

  • Run taxonomic profiling first
  • Quantify gene families and pathways
  • Stratify by organism when relevant
  • Analyze pathway coverage
  • Compare functional profiles
  • Document database versions

Dependencies

  • HUMAnN3
  • eggNOG-mapper
  • Prokka

Process Integration

  • Shotgun Metagenomics Pipeline (shotgun-metagenomics)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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