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Pymol visualizer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/pymol-visualizer

PyMOL molecular visualization skill for structure rendering and analysisFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill pymol-visualizer

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 150 tokens by cl100k_base, as published. Nobody here has run it

PyMOL Visualizer Skill

Purpose

Enable PyMOL molecular visualization for structure rendering and analysis.

Capabilities

  • Protein structure visualization
  • Surface representation
  • Binding site highlighting
  • Movie and animation generation
  • Publication-quality images
  • Scripted visualization pipelines

Usage Guidelines

  • Select appropriate representation styles
  • Highlight functionally important regions
  • Generate consistent visualizations
  • Create animations for presentations
  • Export high-resolution images
  • Document visualization parameters

Dependencies

  • PyMOL
  • ChimeraX
  • VMD
  • NGLview

Process Integration

  • Protein Structure Prediction (protein-structure-prediction)
  • Molecular Docking and Virtual Screening (molecular-docking)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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