agentsclimarketplace
Sign in

Qiime2 microbiome analyzer

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/qiime2-microbiome-analyzer

QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysisFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill qiime2-microbiome-analyzer

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.3 KB, 173 tokens by cl100k_base, as published. Nobody here has run it

QIIME2 Microbiome Analyzer Skill

Purpose

Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.

Capabilities

  • Demultiplexing and denoising (DADA2)
  • Taxonomic classification
  • Alpha diversity metrics
  • Beta diversity analysis
  • Differential abundance testing
  • Phylogenetic analysis

Usage Guidelines

  • Use DADA2 for denoising amplicon data
  • Select appropriate taxonomic classifier
  • Calculate diversity metrics with rarefaction
  • Visualize beta diversity with ordination
  • Test differential abundance appropriately
  • Document pipeline parameters

Dependencies

  • QIIME2
  • DADA2
  • phyloseq

Process Integration

  • 16S rRNA Microbiome Analysis (16s-microbiome-analysis)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

Keep looking

Skills are one crate of 326,059. Ordering is by how many stacks a row turns up in, so the top of any crate is what has actually been picked rather than what has the most stars.