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Pharmgkb annotator

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/pharmgkb-annotator

PharmGKB pharmacogenomics annotation skill for drug-gene interaction assessmentFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill pharmgkb-annotator

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 158 tokens by cl100k_base, as published. Nobody here has run it

PharmGKB Annotator Skill

Purpose

Provide PharmGKB pharmacogenomics annotation for drug-gene interaction assessment.

Capabilities

  • Star allele calling (Stargazer)
  • Diplotype determination
  • CPIC guideline integration
  • Drug recommendation generation
  • Clinical annotation lookup
  • Dosing guidance extraction

Usage Guidelines

  • Call star alleles accurately
  • Determine diplotypes from genotypes
  • Apply CPIC guidelines for dosing
  • Generate actionable recommendations
  • Review clinical annotations
  • Document guideline versions

Dependencies

  • PharmGKB API
  • Stargazer
  • PharmCAT

Process Integration

  • Pharmacogenomics Analysis (pharmacogenomics-analysis)
  • Clinical Variant Interpretation (clinical-variant-interpretation)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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