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Fusion gene detector

Skill a5c-ai/babysitter/library/specializations/domains/science/bioinformatics/skills/fusion-gene-detector

Gene fusion detection skill for oncology applications with multiple caller integrationFrom its SKILL.md

Install
npx -y skills add a5c-ai/babysitter --skill fusion-gene-detector

Assembled from the repository path, not quoted from the project. Check it against their README if it does not work.

SKILL.md

1.4 KB, 156 tokens by cl100k_base, as published. Nobody here has run it

Fusion Gene Detector Skill

Purpose

Enable gene fusion detection for oncology applications with multiple caller integration.

Capabilities

  • RNA-based fusion calling
  • DNA-based fusion detection
  • Multi-caller consensus
  • Visualization of fusion events
  • Known fusion annotation
  • Clinical actionability assessment

Usage Guidelines

  • Use multiple callers for sensitivity
  • Build consensus from different algorithms
  • Annotate with known fusion databases
  • Visualize fusion breakpoints
  • Assess clinical actionability
  • Document caller combinations

Dependencies

  • STAR-Fusion
  • Arriba
  • FusionCatcher

Process Integration

  • Tumor Molecular Profiling (tumor-molecular-profiling)
  • RNA-seq Differential Expression Analysis (rnaseq-differential-expression)

What ships with it

Read from the repository

Just SKILL.md. No reference files, no scripts.

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